Short answer
The Clean Water Act requires Corps of Engineers or state permits before you discharge into, dredge or fill waters, which commonly includes bridge, stream crossing, dock, pier and marina repairs. The Rivers and Harbors Act requires Corps authorization for structures in or over navigable waters. The Safe Drinking Water Act requires FEMA to consult EPA for projects that could contaminate a sole source aquifer.
<table class="pt-table"><thead><tr><th>Law</th><th>Triggered by</th><th>What you need</th></tr></thead><tbody><tr><td>Clean Water Act</td><td>Discharges into waters of the U.S.; dredging or filling in waters; bridges, stream crossings, docks, piers, marinas</td><td>Corps or state permits before work starts; nationwide permit compliance statements or individual Section 404 permits</td></tr><tr><td>Rivers and Harbors Act</td><td>Any structure in or over navigable water, including bridges, causeways, dams, dikes, docks, piers and marinas</td><td>Corps authorization, usually handled with the Section 404 request</td></tr><tr><td>Safe Drinking Water Act</td><td>Projects that could contaminate a sole source aquifer, in its review area</td><td>FEMA consults EPA before funding</td></tr></tbody></table>
Section 404 individual permits or statements of compliance with nationwide permits, Rivers and Harbors Act authorizations, state water permits, and information on whether the project is in a sole source aquifer review area.
Watch out · Govstar practitioner advice
Get the permit before the excavator goes in the water. Appendix D says permits must be acquired before work begins and documented to FEMA; work done without them can lose its funding.